rs33348374 SNP Detail

Summary

• ID
  rs33348374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30360993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGCCAGCAC ACCACCAAGT GGCACTGAGC AGTGATAACA
  AACTCAACTT TAAAAAAAAA ATAAGAAGAA AGAAAGAAAG GAAGAAAGAA AGAAAAGAAA
  R
  GAAAGGAAAG GAAAGGAAAG GAAAGGAAAG GAAGAAAGAA AGAAAAAGGA AAGGAAAAAA
  CTTCCCCAAG TTGCTTGCTT GAGACGTGCT GATGTGCGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45267885	mCV23383270	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss320221097	CHEV_2_30326501	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs33348374					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30360993 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11437	CpG island 11437	80 bp distal
Cpgi11438	CpG island 11438	1351 bp proximal
Gm74813	predicted gene, 74813	1127 bp upstream
Ier5l	immediate early response 5-like	1650 bp downstream
Rr396865	regulatory region 396865	943 bp upstream
Rr554337	regulatory region 554337	1138 bp distal
Rr554338	regulatory region 554338	637 bp distal
Rr554339	regulatory region 554339	987 bp distal
Rr554340	regulatory region 554340	74 bp distal
Tssr458	transcription start site region 458	1759 bp upstream