rs33348870 SNP Detail

Summary

• ID
  rs33348870
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35887252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCC CAGAGAATGC AGGCCCCCCC
  R
  GATGCTAACC TTCCACCAGC CTTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45768493	mCV22744385	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	G
ss148227278	ENSMUSSNP6305543	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
ss321510507	CHEV_5_36072557	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33348870					SNP	A	A	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35887252 () rs orientation: forward

Symbol	Name	Function Class
Rr609995	regulatory region 609995	643 bp distal
Rr609996	regulatory region 609996	142 bp distal
Sh3tc1	SH3 domain and tetratricopeptide repeats 1	within coordinates
Tssr45957	transcription start site region 45957	1496 bp downstream
Tssr50711	transcription start site region 50711	892 bp upstream
Tssr50712	transcription start site region 50712	869 bp upstream
Tssr50713	transcription start site region 50713	830 bp upstream
Tssr50714	transcription start site region 50714	813 bp upstream
Tssr50715	transcription start site region 50715	622 bp upstream
Tssr50716	transcription start site region 50716	596 bp upstream