rs33348934 SNP Detail

Summary

• ID
  rs33348934
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7290130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGCCTG TGGACCTCAT
  TTACAGATCT GGAGTAGGAC GTGACTGTCC TCACCTGAGA ACAGCAAGTG TGTCACCTGA
  TATATTGCAG CCTGAGGTGA CAATGAAATG TGGAAGAAGA GAGCGGACTC TCTGCAGCAG
  CAAGAAAGCG TGGTGAGGTG TAAGGCAAGC CTGTTAATGG GCAGCAAGTG GGACTGGTCC
  Y
  CATCTCTGGT ATATTCAGGT CCTTAAGCTA TAGTTTTGAG AAAGTTCAGA TTTGGATACA
  GGCAATGTTC ACAGTGCCTT TGGGGACAGG GCACCTCTTT ACACCACCGC ACAGTGCCAA
  CGTGTGGAAA CCCTGTGGGG TAGTAATTGG TAGCATTTTA AAGGTGACAA AATTGAGACT
  CAAAGAGGAC AAGGCTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46802215	NES11003897	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33348934					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802215	NES11003897	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7290130 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	903 bp upstream
Cpgi22567	CpG island 22567	1011 bp distal
DXImx8	DNA segment, Chr X, Immunex 8	918 bp proximal
Tssr162787	transcription start site region 162787	950 bp upstream
Tssr162788	transcription start site region 162788	917 bp upstream
Tssr162789	transcription start site region 162789	895 bp upstream