rs33349084 SNP Detail

Summary

• ID
  rs33349084
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7190055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGTGATA TGATGAAATC
  GTCTACATAA TGAAAAAGCA CTCATGTCAC AAAAGCACAT CACTGTGCTC TCTGAACCAT
  CATGGCTACA AGCACTTCTT TCACCTTCAA ATTAACACTG CAAGTAAAGG CCCAAAGAGA
  TAGCTGTGTG GCCATGAAAG GGAAAGCCTG AATGCTTCTG GTATTGTTTG TATTTATCAT
  R
  TATTTCACTA TTGTGCTATC TCCCAATGCC ACTTTTGTCT TTATTTTTGT GATGCTAAGG
  GTTAAACTTT GCTAAGCATG CTCTGTACCA GCTGGGACAT TAATTTCAAA GCCAAACATC
  TAGAGTGCTC AAGAAATGTC AAGGTTAGTT TCAGAAAAAT GAAGCAGAAT AAAAGGCAAT
  GAACAGATTT CCCTAGCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46801813	NES11002904	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33349084					SNP	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46801813	NES11002904	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7190055 () rs orientation: forward

Symbol	Name	Function Class
DXImx31	DNA segment, Chr X, Immunex 31	1744 bp distal
DXImx32	DNA segment, Chr X, Immunex 32	1943 bp proximal
Rr4531	regulatory region 4531	1055 bp distal
Rr4534	regulatory region 4534	1546 bp proximal
Rr9978	regulatory region 9978	979 bp distal
Rr10750	regulatory region 10750	1645 bp proximal