rs33349087 SNP Detail

Summary

• ID
  rs33349087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7190123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGAACC ATCATGGCTA
  CAAGCACTTC TTTCACCTTC AAATTAACAC TGCAAGTAAA GGCCCAAAGA GATAGCTGTG
  TGGCCATGAA AGGGAAAGCC TGAATGCTTC TGGTATTGTT TGTATTTATC ATATATTTCA
  CTATTGTGCT ATCTCCCAAT GCCACTTTTG TCTTTATTTT TGTGATGCTA AGGGTTAAAC
  Y
  TTGCTAAGCA TGCTCTGTAC CAGCTGGGAC ATTAATTTCA AAGCCAAACA TCTAGAGTGC
  TCAAGAAATG TCAAGGTTAG TTTCAGAAAA ATGAAGCAGA ATAAAAGGCA ATGAACAGAT
  TTCCCTAGCT CCCTCCCAGC TTCTTAAACT GTTGGTCACT ACTTTATATG GGGGTCACAG
  AGCTGAATGT GAGGGTCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46801816	NES11002907	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33349087					SNP	T	T	T	T	T	T	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46801816	NES11002907	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7190123 () rs orientation: forward

Symbol	Name	Function Class
DXImx31	DNA segment, Chr X, Immunex 31	1812 bp distal
DXImx32	DNA segment, Chr X, Immunex 32	1875 bp proximal
Rr4531	regulatory region 4531	1123 bp distal
Rr4534	regulatory region 4534	1478 bp proximal
Rr9978	regulatory region 9978	1047 bp distal
Rr10750	regulatory region 10750	1577 bp proximal