rs33349090 SNP Detail

Summary

• ID
  rs33349090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7190226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTTCTGG TATTGTTTGT
  ATTTATCATA TATTTCACTA TTGTGCTATC TCCCAATGCC ACTTTTGTCT TTATTTTTGT
  GATGCTAAGG GTTAAACTTT GCTAAGCATG CTCTGTACCA GCTGGGACAT TAATTTCAAA
  GCCAAACATC TAGAGTGCTC AAGAAATGTC AAGGTTAGTT TCAGAAAAAT GAAGCAGAAT
  R
  AAAGGCAATG AACAGATTTC CCTAGCTCCC TCCCAGCTTC TTAAACTGTT GGTCACTACT
  TTATATGGGG GTCACAGAGC TGAATGTGAG GGTCAGGAAA AACAACAACA ATAACAACAA
  CTTGGCAACA GTAAAGGATT TCTGAATATG CAACAAACAA AAATTAATTC AAGAGGAAAC
  AAATAATGAG TTACGGGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46801819	NES11002910	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33349090					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46801819	NES11002910	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7190226 () rs orientation: forward

Symbol	Name	Function Class
DXImx31	DNA segment, Chr X, Immunex 31	1915 bp distal
DXImx32	DNA segment, Chr X, Immunex 32	1772 bp proximal
Rr4531	regulatory region 4531	1226 bp distal
Rr4534	regulatory region 4534	1375 bp proximal
Rr9978	regulatory region 9978	1150 bp distal
Rr10750	regulatory region 10750	1474 bp proximal