rs33349265 SNP Detail

Summary

• ID
  rs33349265
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:112063880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTCTTGGG AGTAGCCACC TTCTCCTGCA GCCAGTCCTT
  GCGCTGATCT GTCCGCCCCT CTGCGACCTG TGGTCCCACC AGCAATGCGG GAACCAGGTG
  R
  CTGTCGTTGG AGCCCGCAGC GTCTCTGCTA CTTTGCTACT TTGCGCTCCG GCCACTTCCC
  CAGGTCGGGT GGGAGGAGGT GACTGCAGGG AGCGAGTGCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47787451	NES11997223	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33349265					SNP	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787451	NES11997223	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112063880 () rs orientation: forward

Symbol	Name	Function Class
2900079G21Rik	RIKEN cDNA 2900079G21 gene	within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21	within coordinates
Cpgi22409	CpG island 22409	within coordinates
Gm68368	predicted gene, 68368	213 bp downstream
Rr687420	regulatory region 687420	1821 bp distal
Rr687421	regulatory region 687421	479 bp distal
Rr687422	regulatory region 687422	within coordinates
Rr687423	regulatory region 687423	196 bp proximal
Tssr87517	transcription start site region 87517	561 bp downstream
Tssr87518	transcription start site region 87518	499 bp downstream
Tssr91798	transcription start site region 91798	1684 bp upstream
Tssr91799	transcription start site region 91799	1558 bp upstream
Tssr91800	transcription start site region 91800	1543 bp upstream
Tssr91801	transcription start site region 91801	1526 bp upstream
Tssr91802	transcription start site region 91802	1489 bp upstream
Tssr91803	transcription start site region 91803	1400 bp upstream
Tssr91804	transcription start site region 91804	1242 bp upstream
Tssr91805	transcription start site region 91805	193 bp upstream
Tssr91806	transcription start site region 91806	168 bp upstream
Tssr91807	transcription start site region 91807	within coordinates
Tssr91808	transcription start site region 91808	18 bp downstream
Tssr91809	transcription start site region 91809	72 bp downstream
Tssr91810	transcription start site region 91810	144 bp downstream
Tssr91811	transcription start site region 91811	330 bp downstream
Tssr91812	transcription start site region 91812	640 bp downstream
Tssr91813	transcription start site region 91813	699 bp downstream
Tssr91814	transcription start site region 91814	1018 bp downstream
Tssr91815	transcription start site region 91815	1042 bp downstream
Tssr91816	transcription start site region 91816	1077 bp downstream
Tssr91817	transcription start site region 91817	1088 bp downstream
Tssr91818	transcription start site region 91818	1107 bp downstream
Tssr91819	transcription start site region 91819	1128 bp downstream
Tssr91820	transcription start site region 91820	1154 bp downstream