rs33349267 SNP Detail

Summary

• ID
  rs33349267
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:112063886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTGAGC TCCTGTCTGT
  CTATTTGCCT GTCTGTCAGT CTGTCTGCTT CAGGAAAGGG GTTGGGGGTG GTGTCCAGGC
  TTTGCTCTGC TCCTCTCTCT TGGGAGTAGC CACCTTCTCC TGCAGCCAGT CCTTGCGCTG
  ATCTGTCCGC CCCTCTGCGA CCTGTGGTCC CACCAGCAAT GCGGGAACCA GGTGACTGTC
  S
  TTGGAGCCCG CAGCGTCTCT GCTACTTTGC TACTTTGCGC TCCGGCCACT TCCCCAGGTC
  GGGTGGGAGG AGGTGACTGC AGGGAGCGAG TGCACGGGGC TGGCTGTCCC TGTCCCTCCC
  TCTCCGTCTC CCTGCCCGCT GAGTGCTCCC TCTTCTCTCT CTCTCTCTCT CCTCTCTCTC
  CTCTTCTCTC CTCTCCTCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47787453	NES11997224	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33349267					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787453	NES11997224	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112063886 () rs orientation: forward

Symbol	Name	Function Class
2900079G21Rik	RIKEN cDNA 2900079G21 gene	within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21	within coordinates
Cpgi22409	CpG island 22409	within coordinates
Gm68368	predicted gene, 68368	207 bp downstream
Rr687420	regulatory region 687420	1827 bp distal
Rr687421	regulatory region 687421	485 bp distal
Rr687422	regulatory region 687422	within coordinates
Rr687423	regulatory region 687423	190 bp proximal
Tssr87517	transcription start site region 87517	567 bp downstream
Tssr87518	transcription start site region 87518	505 bp downstream
Tssr91798	transcription start site region 91798	1690 bp upstream
Tssr91799	transcription start site region 91799	1564 bp upstream
Tssr91800	transcription start site region 91800	1549 bp upstream
Tssr91801	transcription start site region 91801	1532 bp upstream
Tssr91802	transcription start site region 91802	1495 bp upstream
Tssr91803	transcription start site region 91803	1406 bp upstream
Tssr91804	transcription start site region 91804	1248 bp upstream
Tssr91805	transcription start site region 91805	199 bp upstream
Tssr91806	transcription start site region 91806	174 bp upstream
Tssr91807	transcription start site region 91807	within coordinates
Tssr91808	transcription start site region 91808	12 bp downstream
Tssr91809	transcription start site region 91809	66 bp downstream
Tssr91810	transcription start site region 91810	138 bp downstream
Tssr91811	transcription start site region 91811	324 bp downstream
Tssr91812	transcription start site region 91812	634 bp downstream
Tssr91813	transcription start site region 91813	693 bp downstream
Tssr91814	transcription start site region 91814	1012 bp downstream
Tssr91815	transcription start site region 91815	1036 bp downstream
Tssr91816	transcription start site region 91816	1071 bp downstream
Tssr91817	transcription start site region 91817	1082 bp downstream
Tssr91818	transcription start site region 91818	1101 bp downstream
Tssr91819	transcription start site region 91819	1122 bp downstream
Tssr91820	transcription start site region 91820	1148 bp downstream