rs33349270 SNP Detail

Summary

• ID
  rs33349270
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:112065154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCAGTGCT GCCTGCCCCA
  CTGGGCGCTG ATGCGCTGAC TGAGAGAAAC CTTGCACTGC AGAGCCCAGA GGGGTAGGGC
  TGGGGCAGGG AGCAGAGTTG ACACCTGAAG AAATAAAAGC TCTGATTTAC CCATTTGTTT
  TGGAGATGAG TACTATTTTT ATTATGTGCA ATTCTTTTTT TTTTCATAAT CTAAGGGCAC
  R
  CTACCAAGAG GAGAAAAAAG TACAGTGAAG AGTGAATAAA TTTCCGGAAT ACCGCCCACC
  CGCTAGCGAC TATACATCCT ACTTTCCGAC AGCGTAGGTC ACCAGCCAAG ATAGCCCATT
  CTAGCTTCCT ACCCCCAGCT GAGAGCAAGG CATTGGATTC TGGCCTTCTT GGCTGGCTTG
  TTATTAATGG GTAGCAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47787457	NES11997156	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33349270					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787457	NES11997156	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112065154 () rs orientation: forward

Symbol	Name	Function Class
2900079G21Rik	RIKEN cDNA 2900079G21 gene	within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21	148 bp upstream
Cpgi22409	CpG island 22409	323 bp distal
Gm68368	predicted gene, 68368	569 bp upstream
Rr687421	regulatory region 687421	1753 bp distal
Rr687422	regulatory region 687422	1079 bp distal
Rr687423	regulatory region 687423	79 bp distal
Tssr87517	transcription start site region 87517	1835 bp downstream
Tssr87518	transcription start site region 87518	1773 bp downstream
Tssr91805	transcription start site region 91805	1467 bp upstream
Tssr91806	transcription start site region 91806	1442 bp upstream
Tssr91807	transcription start site region 91807	1264 bp upstream
Tssr91808	transcription start site region 91808	1228 bp upstream
Tssr91809	transcription start site region 91809	1183 bp upstream
Tssr91810	transcription start site region 91810	1119 bp upstream
Tssr91811	transcription start site region 91811	890 bp upstream
Tssr91812	transcription start site region 91812	584 bp upstream
Tssr91813	transcription start site region 91813	550 bp upstream
Tssr91814	transcription start site region 91814	244 bp upstream
Tssr91815	transcription start site region 91815	221 bp upstream
Tssr91816	transcription start site region 91816	192 bp upstream
Tssr91817	transcription start site region 91817	175 bp upstream
Tssr91818	transcription start site region 91818	153 bp upstream
Tssr91819	transcription start site region 91819	140 bp upstream
Tssr91820	transcription start site region 91820	111 bp upstream