rs33349272 SNP Detail

Summary

• ID
  rs33349272
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:112065682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTAGCAG TTGGTGATTA
  GTAACCTCAT GAACAAACCA CAAATATATA ACTACCATAA AATATGCCAC GAAAATCTCT
  TCTTTTATTT ATTTATTTAT TTATTTATTT ATTTATTGAC TTCTATTTAG GTACACCTAC
  CTTTAATGGT GGTCGTTAAA AATGAAAAAA CAAAAACAAA AACAAAACTA GGCTTATAAG
  K
  CACATGGCTT CCGTGGTGTT CTAGAAGAGT GATTTGCATA GAATCTTTAT GGTCATGCTG
  TCGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTTCGCTCAC GCATGTGTAC
  ACTGCGGGGA GTAGGAGGTT GGATTGGTCC TTGCTGCACA GATCATTATT TTCTATCTGT
  TAGTGTCTCC CTCTGGGTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47787459	NES11997157	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33349272					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787459	NES11997157	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112065682 () rs orientation: forward

Symbol	Name	Function Class
2900079G21Rik	RIKEN cDNA 2900079G21 gene	within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21	676 bp upstream
Cpgi22409	CpG island 22409	851 bp distal
Gm68368	predicted gene, 68368	1097 bp upstream
Rr687422	regulatory region 687422	1607 bp distal
Rr687423	regulatory region 687423	607 bp distal
Tssr91805	transcription start site region 91805	1995 bp upstream
Tssr91806	transcription start site region 91806	1970 bp upstream
Tssr91807	transcription start site region 91807	1792 bp upstream
Tssr91808	transcription start site region 91808	1756 bp upstream
Tssr91809	transcription start site region 91809	1711 bp upstream
Tssr91810	transcription start site region 91810	1647 bp upstream
Tssr91811	transcription start site region 91811	1418 bp upstream
Tssr91812	transcription start site region 91812	1112 bp upstream
Tssr91813	transcription start site region 91813	1078 bp upstream
Tssr91814	transcription start site region 91814	772 bp upstream
Tssr91815	transcription start site region 91815	749 bp upstream
Tssr91816	transcription start site region 91816	720 bp upstream
Tssr91817	transcription start site region 91817	703 bp upstream
Tssr91818	transcription start site region 91818	681 bp upstream
Tssr91819	transcription start site region 91819	668 bp upstream
Tssr91820	transcription start site region 91820	639 bp upstream