rs33349416 SNP Detail

Summary

• ID
  rs33349416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7334337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCATTTA ATAGTACTAT
  ATCAGGATCA ATGCCTGGCA TTTAATAAAT ACCCTGAGGT TACTCAAGAC AAGGAGAGGT
  TAAATGATGA GCTCACAGGA ATTCTTTGTA CCATTTTCAC AACCTTTGTG TAACTCTAAA
  ATTATGTCAA AATAAAATCT TGAGAGGAAA AATGATAAAG AGAAGCCTGG GACATGCTAT
  Y
  CCTAACTTCA AAGAGGTAAA ATTTTCTTCC AGAACCTTCT TTTTTTTTTT TTTTTTTTTT
  TTTGCCAGCA TCTGAATTCC TCTGGGAACT CAACAGTGAC TCCCAGAGGC TGCCAGCTTC
  AGTAACAACA AATCAGTTCA GTGATCTGGA GAAATGAGCT GTTTGGACCT CCGTTTCCAA
  ACCATTGAAC AAATGGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46802758	NES11001910	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33349416					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802758	NES11001910	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7334337 () rs orientation: forward

Symbol	Name	Function Class
DXImx26	DNA segment, Chr X, Immunex 26	891 bp proximal
DXImx27	DNA segment, Chr X, Immunex 27	534 bp proximal
Gm32829	predicted gene, 32829	within coordinates