rs33349613 SNP Detail

Summary

• ID
  rs33349613
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100323562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGGATGG CCTCTCACAT
  TCCATAGATG TCTACTGCTC TGCTCTTAGC ACTGCCAAGT GAGGTGAGTG TATCCTGATT
  TCTTTGTGCC CCACCCTAGA GCCTCAGCTA ACTGATAATA GTTCCCAACA CACTGAACCA
  GCAAGCATCT GCAGAAACTT CTAACTAGTT ATTGAGAAAG CCGAAGTCAC ACTGGGTCCT
  R
  TGGCAAAACT ATTGTCAGTC ATGTTTCCAG CAGGCCAAGA CTGTCATAAA GAGACAGGCA
  GAGATGAACA GAGAAAAATA TAATAGGTGG TGCTTGGTTC TGTTGCTCTA GTGACGTCAG
  CACTGTTACC TAGCTTGGTT GTTCTGCTCT GCTTAGGACA GACAGGCATT TCCCTTTGTG
  CCTTTAGAGG AAAGGGTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46802679	NES10738247	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33349613					SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802679	NES10738247	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100323562 () rs orientation: forward

Symbol	Name	Function Class
Gm12464	predicted gene 12464	1671 bp downstream
Gm32471	predicted gene, 32471	1635 bp upstream
Rr581844	regulatory region 581844	1482 bp proximal
Rr581845	regulatory region 581845	1646 bp proximal
Rr581846	regulatory region 581846	1988 bp proximal