rs33349703 SNP Detail

Summary

• ID
  rs33349703
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:83081371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGATTCAC TCTCTGTTGG TTGTTATTGT CCTAATTTTA
  TTGCCAAGAA AAAACAATCT TTCCCTATGT GCATGTTACC CTTAATATCC TCTCTTCCGG
  K
  GAGAGAAGTT ATAGCTTAGG CCCAATTTAT AATTTTACTG TTCATTTAAT TTCCTTTAAC
  ACTTTAAAAT GTTATGTGAA GGCTCTGACT TGTCAAAAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss46265233	mCV24054938	ABI	CRAMUS_MOUSE	f	SNP	G	G		T		G
ss51971190	NES14983401	PERLEGEN	MM_PANEL2	f	SNP			G		G	G	T	G		T	G		G
ss145303291	ENSMUSSNP2335975	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G				G
ss322735752	CHEV_8_84878641	CHEVERUD	SCREENING_POP	f	SNP									G			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs33349703					SNP	G	G	G	T	G	G	T	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971190	NES14983401	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83081371 () rs orientation: forward

Symbol	Name	Function Class
Il15	interleukin 15	within coordinates
Tssr81943	transcription start site region 81943	1320 bp upstream
Tssr81944	transcription start site region 81944	1262 bp upstream
Tssr81945	transcription start site region 81945	1211 bp upstream
Tssr81946	transcription start site region 81946	1158 bp upstream
Tssr81947	transcription start site region 81947	395 bp upstream
Tssr81948	transcription start site region 81948	1423 bp downstream