rs33349889 SNP Detail

Summary

• ID
  rs33349889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6180430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAGTCCTG GTGTCTAGGG AGCGCTGTGC CTTGTAGTAT
  CTTTATATTG TGAAAAGGAC AAGGAAACTT GTTGGAGCCT GTGTCATGAG GATGAAGAGT
  Y
  ATGGCAGAAT CACTTCCCAA GGTGCCTACC TCTTAAACTT TTAGAGGTAG GTTTATTTTA
  TGTGTATTAG TGTTTTGCCT GCATGTACAT CTGTGTACC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39525183	mCV22811238	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		T
ss60525306	NES16542762	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	C	C		C	C	C	C		C
ss145081471	ENSMUSSNP4861691	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss325290123	CHEV_17_6130155	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33349889					SNP	C	C	T	T	T	C	T	C	C	T	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60525306	NES16542762	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6180430 () rs orientation: forward

Symbol	Name	Function Class
Gm15590	predicted gene 15590	1699 bp downstream
Gm55175	predicted gene, 55175	1681 bp downstream
Gm66616	predicted gene, 66616	1517 bp upstream
Rr392221	regulatory region 392221	137 bp downstream
Rr521309	regulatory region 521309	1761 bp distal
Rr521310	regulatory region 521310	440 bp distal
Tssr142468	transcription start site region 142468	1780 bp downstream
Tulp4	TUB like protein 4	within coordinates