rs33349984 SNP Detail

Summary

• ID
  rs33349984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:112065721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAATATAT AACTACCATA
  AAATATGCCA CGAAAATCTC TTCTTTTATT TATTTATTTA TTTATTTATT TATTTATTGA
  CTTCTATTTA GGTACACCTA CCTTTAATGG TGGTCGTTAA AAATGAAAAA ACAAAAACAA
  AAACAAAACT AGGCTTATAA GTCACATGGC TTCCGTGGTG TTCTAGAAGA GTGATTTGCA
  Y
  AGAATCTTTA TGGTCATGCT GTCGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTTCGCTCA CGCATGTGTA CACTGCGGGG AGTAGGAGGT TGGATTGGTC CTTGCTGCAC
  AGATCATTAT TTTCTATCTG TTAGTGTCTC CCTCTGGGTT TCCACTTCTG CAGGGCAGGA
  AAAATCCACA GCAGAAAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47787461	NES11997158	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33349984					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787461	NES11997158	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112065721 () rs orientation: forward

Symbol	Name	Function Class
2900079G21Rik	RIKEN cDNA 2900079G21 gene	within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21	715 bp upstream
Cpgi22409	CpG island 22409	890 bp distal
Gm68368	predicted gene, 68368	1136 bp upstream
Rr687422	regulatory region 687422	1646 bp distal
Rr687423	regulatory region 687423	646 bp distal
Tssr91807	transcription start site region 91807	1831 bp upstream
Tssr91808	transcription start site region 91808	1795 bp upstream
Tssr91809	transcription start site region 91809	1750 bp upstream
Tssr91810	transcription start site region 91810	1686 bp upstream
Tssr91811	transcription start site region 91811	1457 bp upstream
Tssr91812	transcription start site region 91812	1151 bp upstream
Tssr91813	transcription start site region 91813	1117 bp upstream
Tssr91814	transcription start site region 91814	811 bp upstream
Tssr91815	transcription start site region 91815	788 bp upstream
Tssr91816	transcription start site region 91816	759 bp upstream
Tssr91817	transcription start site region 91817	742 bp upstream
Tssr91818	transcription start site region 91818	720 bp upstream
Tssr91819	transcription start site region 91819	707 bp upstream
Tssr91820	transcription start site region 91820	678 bp upstream