rs33349988 SNP Detail

Summary

• ID
  rs33349988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:112066015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGTTGG ATTGGTCCTT
  GCTGCACAGA TCATTATTTT CTATCTGTTA GTGTCTCCCT CTGGGTTTCC ACTTCTGCAG
  GGCAGGAAAA ATCCACAGCA GAAAGTTTCA GGCAAAAGGA TCCTCCAGCT TCCAGGACTC
  ATGGGCACTT TGGTTTTAGC TCCGTCTTTC CTGCTAACTC CTCTCAAAAC GTATTGGTAA
  R
  TGTTTTCCAG CCACTTCGAA TGCAACAGAA AAAAAAATCA AAATATTTCT AATCATATCC
  CAATCATATC TAACTCTAAA AACCAAACAC TAAGTTTCTT CTTGGGAAAG TGTGTAAAGT
  TGTGTATGTG GTCAGTGTAG AAACCTTCCC ATACACACAC ACCCACACAC AGAATCCAGT
  TCTGTAAACC AGAACAGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47787465	NES11997160	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33349988					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787465	NES11997160	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112066015 () rs orientation: forward

Symbol	Name	Function Class
2900079G21Rik	RIKEN cDNA 2900079G21 gene	within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21	1009 bp upstream
Cpgi22409	CpG island 22409	1184 bp distal
Gm68368	predicted gene, 68368	1430 bp upstream
Rr687422	regulatory region 687422	1940 bp distal
Rr687423	regulatory region 687423	940 bp distal
Tssr91810	transcription start site region 91810	1980 bp upstream
Tssr91811	transcription start site region 91811	1751 bp upstream
Tssr91812	transcription start site region 91812	1445 bp upstream
Tssr91813	transcription start site region 91813	1411 bp upstream
Tssr91814	transcription start site region 91814	1105 bp upstream
Tssr91815	transcription start site region 91815	1082 bp upstream
Tssr91816	transcription start site region 91816	1053 bp upstream
Tssr91817	transcription start site region 91817	1036 bp upstream
Tssr91818	transcription start site region 91818	1014 bp upstream
Tssr91819	transcription start site region 91819	1001 bp upstream
Tssr91820	transcription start site region 91820	972 bp upstream