rs33349990 SNP Detail

Summary

• ID
  rs33349990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:112066032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCTGCAC AGATCATTAT
  TTTCTATCTG TTAGTGTCTC CCTCTGGGTT TCCACTTCTG CAGGGCAGGA AAAATCCACA
  GCAGAAAGTT TCAGGCAAAA GGATCCTCCA GCTTCCAGGA CTCATGGGCA CTTTGGTTTT
  AGCTCCGTCT TTCCTGCTAA CTCCTCTCAA AACGTATTGG TAAATGTTTT CCAGCCACTT
  Y
  GAATGCAACA GAAAAAAAAA TCAAAATATT TCTAATCATA TCCCAATCAT ATCTAACTCT
  AAAAACCAAA CACTAAGTTT CTTCTTGGGA AAGTGTGTAA AGTTGTGTAT GTGGTCAGTG
  TAGAAACCTT CCCATACACA CACACCCACA CACAGAATCC AGTTCTGTAA ACCAGAACAG
  AAATTGCAGC TTTTGAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47787467	NES11997161	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33349990					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787467	NES11997161	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112066032 () rs orientation: forward

Symbol	Name	Function Class
2900079G21Rik	RIKEN cDNA 2900079G21 gene	within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21	1026 bp upstream
Cpgi22409	CpG island 22409	1201 bp distal
Gm68368	predicted gene, 68368	1447 bp upstream
Rr687422	regulatory region 687422	1957 bp distal
Rr687423	regulatory region 687423	957 bp distal
Tssr91810	transcription start site region 91810	1997 bp upstream
Tssr91811	transcription start site region 91811	1768 bp upstream
Tssr91812	transcription start site region 91812	1462 bp upstream
Tssr91813	transcription start site region 91813	1428 bp upstream
Tssr91814	transcription start site region 91814	1122 bp upstream
Tssr91815	transcription start site region 91815	1099 bp upstream
Tssr91816	transcription start site region 91816	1070 bp upstream
Tssr91817	transcription start site region 91817	1053 bp upstream
Tssr91818	transcription start site region 91818	1031 bp upstream
Tssr91819	transcription start site region 91819	1018 bp upstream
Tssr91820	transcription start site region 91820	989 bp upstream