rs33349993 SNP Detail

Summary

• ID
  rs33349993
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:112066768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGGACTG AAATATCCTC
  TTGGGGCTAT TAGGCAGGTA GTGAGCAATG TTCTTATTGT AGGCGTTTGG AAGGTGTGCA
  CATTTCCTTA AATGATTTGA AGTGGTTCTT AACGGTTATG GCCCAGACCT TTCATTGTGT
  AAAATGAGAT CTTCCATGTC GGACCTCTGA GTGATAAAGT CACAGTGGCA GTGATATCCT
  S
  ACTTTAAAGA TGCCATGGAG GAGTGGCAAA GCAGGAGGTG CTCTTAGATG TGAGGGCCCT
  TGAGTGTTTG CTGGTACTGT GTTTGCAATG AAGGAGTATG CCTGTAACCA GGTAACCCTA
  GCTCAGGGAG TTGAGCTCAC CTATACACTG GCAAACATCT GAGGCTGTTG GCAAGCTCCT
  TTAAACACAT ATTCCCTGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss47787471	NES11997163	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs33349993					SNP	C	C	C	C	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787471	NES11997163	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112066768 () rs orientation: forward

Symbol	Name	Function Class
2900079G21Rik	RIKEN cDNA 2900079G21 gene	within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21	1762 bp upstream
Cpgi22409	CpG island 22409	1937 bp distal
Rr687423	regulatory region 687423	1693 bp distal
Tssr91814	transcription start site region 91814	1858 bp upstream
Tssr91815	transcription start site region 91815	1835 bp upstream
Tssr91816	transcription start site region 91816	1806 bp upstream
Tssr91817	transcription start site region 91817	1789 bp upstream
Tssr91818	transcription start site region 91818	1767 bp upstream
Tssr91819	transcription start site region 91819	1754 bp upstream
Tssr91820	transcription start site region 91820	1725 bp upstream