rs33350306 SNP Detail

Summary

• ID
  rs33350306
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100323598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTGCTCT TAGCACTGCC
  AAGTGAGGTG AGTGTATCCT GATTTCTTTG TGCCCCACCC TAGAGCCTCA GCTAACTGAT
  AATAGTTCCC AACACACTGA ACCAGCAAGC ATCTGCAGAA ACTTCTAACT AGTTATTGAG
  AAAGCCGAAG TCACACTGGG TCCTGTGGCA AAACTATTGT CAGTCATGTT TCCAGCAGGC
  Y
  AAGACTGTCA TAAAGAGACA GGCAGAGATG AACAGAGAAA AATATAATAG GTGGTGCTTG
  GTTCTGTTGC TCTAGTGACG TCAGCACTGT TACCTAGCTT GGTTGTTCTG CTCTGCTTAG
  GACAGACAGG CATTTCCCTT TGTGCCTTTA GAGGAAAGGG TCTGACTCTA GGGTAAAATG
  TCTGGGCCCA CTTCCAGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46802682	NES10738248	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	C	C	T	T		C	C	T	C
ss135539314	ENSMUSSNP5430187	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C										T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33350306					SNP	C	C	C	C	C	C	C	T	C	C	T	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802682	NES10738248	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100323598 () rs orientation: forward

Symbol	Name	Function Class
Gm12464	predicted gene 12464	1707 bp downstream
Gm32471	predicted gene, 32471	1599 bp upstream
Rr581844	regulatory region 581844	1446 bp proximal
Rr581845	regulatory region 581845	1610 bp proximal
Rr581846	regulatory region 581846	1952 bp proximal