rs33350631 SNP Detail

Summary

• ID
  rs33350631
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:110647785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGACAAA TTTTTCTAGT
  GAATCTTTTT TTCAGGGAGC ACAGATTATT ATAACACCTC AGTAAAGAGC TACTAACTAG
  CGAACAAACT CAATGCAAAC GATAAAAATG AGATGTCTGT CAACAAGGCA GCCGCAGGAA
  CAGGCTGCGA GTGTTCCCAG GGGCCCCTCC CTTCTTGAGG AGGGCAGAGG GCAGCTGTTG
  M
  TTAGCCTGGT GATGTCATCT TTCACCCCCA CCCCACCCCC AAACCCTGTC ACAACCCCTG
  GGGCTGTGTC CAGAAAGACA AGCTGGAAAC CTGGCTGCAG TCCCAGAAAG TGGGAGTGAA
  TCTCGGGGCG CAATCTCCTG GGAGAAAGGT GGGCTTAGCC CAAAGAGGGA TCAGAGCTCA
  CATAGAGTGG CTTCCTCCGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss47288061	NES11406095	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	C	C		A	C
ss324158705	CHEV_12_111919561	CHEVERUD	SCREENING_POP	f	SNP						A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs33350631					SNP	C	A	C	C	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47288061	NES11406095	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110647785 () rs orientation: forward

Symbol	Name	Function Class
1700001K19Rik	RIKEN cDNA 1700001K19 gene	Intron
Gm53768	predicted gene, 53768	1413 bp upstream
Rr472964	regulatory region 472964	within coordinates
Tssr117784	transcription start site region 117784	1206 bp downstream
Tssr117785	transcription start site region 117785	1255 bp downstream