rs33351335 SNP Detail

Summary

• ID
  rs33351335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52209515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCACATAC AAATTTACAC ACACACACAC ACACACACAC
  ACACACTCAA ACATACACAT TCACACACAT ATACTCACAC ACTCACTTAT TCACACACAC
  Y
  GGCATACATA TACTCACATA TAAATTCACA CAGATATACA TTTTGCCTAT AAGTGCAGCA
  TAGTCTCTAG AGTATCATGT TTTTCATAGT TAGTGATTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39525433	mCV25232010	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	C
ss325417416	CHEV_17_52041812	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33351335					SNP	T	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52209515 () rs orientation: forward

Symbol	Name	Function Class
Gm20098	predicted gene, 20098	within coordinates
Rr335418	regulatory region 335418	486 bp proximal
Rr370289	regulatory region 370289	1592 bp upstream
Rr405357	regulatory region 405357	1308 bp upstream
Tssr145177	transcription start site region 145177	1718 bp upstream
Tssr148690	transcription start site region 148690	1433 bp downstream
Tssr148691	transcription start site region 148691	1463 bp downstream