rs33351474 SNP Detail

Summary

• ID
  rs33351474
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:110647874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATGCAAA CGATAAAAAT
  GAGATGTCTG TCAACAAGGC AGCCGCAGGA ACAGGCTGCG AGTGTTCCCA GGGGCCCCTC
  CCTTCTTGAG GAGGGCAGAG GGCAGCTGTT GCTTAGCCTG GTGATGTCAT CTTTCACCCC
  CACCCCACCC CCAAACCCTG TCACAACCCC TGGGGCTGTG TCCAGAAAGA CAAGCTGGAA
  W
  CCTGGCTGCA GTCCCAGAAA GTGGGAGTGA ATCTCGGGGC GCAATCTCCT GGGAGAAAGG
  TGGGCTTAGC CCAAAGAGGG ATCAGAGCTC ACATAGAGTG GCTTCCTCCG GCTGGAGAGA
  TGGCCCAGTG GATAAGAGCA CTGGCTGCTC TTCCAGGGGT CCTGAGTTCA ATTCCCATGG
  TGGCTCACAA CCATCTGTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47288064	NES11406097	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33351474					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47288064	NES11406097	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110647874 () rs orientation: forward

Symbol	Name	Function Class
1700001K19Rik	RIKEN cDNA 1700001K19 gene	Intron
Gm53768	predicted gene, 53768	1324 bp upstream
Rr472964	regulatory region 472964	within coordinates
Tssr117784	transcription start site region 117784	1117 bp downstream
Tssr117785	transcription start site region 117785	1166 bp downstream