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rs33352024 SNP Detail
Summary
  • ID
    rs33352024
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr5:128812947 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCACCTGATC ACGCCACCTC
    AATTTCATCT GCAGTGGGTT TTGGCACAGG GTGACTCTAA CGTGTCCTGT GGCGATACTG
    CAGCAAGTGG CGCGAACCTG CCTCATCTTC GCTTGGCACG AACCAGTCAC CTACTCCAAG
    AATTTGGAAA AATGAAAATT TGGAAAACGA CTTATCCTTT CGGCTTTCCT TCAAACCTCA
    Y
    ACGTCTCAGG GGTGGAATGG CTTGCGACTT TTAAGGCCAG CCAGAGATGG AGTCCCAACT
    CTTTCTCTGC AAGACGCTGG AAGGGCCACC ATTGAGTGAG GAGGATTCGC ACCTGGAGCA
    AGGACCAAGA AGAATGGGGC TTGGGTGTGG TCTCGAGACC CCGCCCCACA CAAAACCGCC
    ACCCACGTGG CAGCCAATCA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss45767657 mCV23759947 ABI CRAMUS_MOUSE f SNP C C T
ss51843723 NES14705139 PERLEGEN MM_PANEL2 f SNP C T T T T T C T T C C T C C C
ss149244948 ENSMUSSNP1938037 ENSEMBL ENSEMBL_Sanger f SNP C T
ss321688012 CHEV_5_129241758 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs33352024 SNP C C T T T T T C T T C T C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51843723 NES14705139 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:128812947 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
4930553I04Rik RIKEN cDNA 4930553I04 gene within coordinates
Cpgi16665 CpG island 16665 within coordinates
Gm71554 predicted gene, 71554 within coordinates
Piwil1 piwi-like RNA-mediated gene silencing 1 188 bp upstream
Rr621172 regulatory region 621172 1567 bp distal
Rr621173 regulatory region 621173 1687 bp distal
Tssr1644 transcription start site region 1644 277 bp upstream
Tssr48983 transcription start site region 48983 203 bp upstream
Tssr48984 transcription start site region 48984 242 bp upstream
Tssr48985 transcription start site region 48985 285 bp upstream
Tssr48986 transcription start site region 48986 359 bp upstream
Tssr53471 transcription start site region 53471 128 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory