rs33352196 SNP Detail

Summary

• ID
  rs33352196
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7335346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAGCTCTA ACATTCTAGG ATGCTGCTAT TTGAGATATG
  ACTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  W
  CCTTCCAGAG ATATTTAAGG AATAATTACC ATCATCATAT GGTGAAAAAT CTCAGTTTTA
  TCAGTTTGGG TAGAATCCTT TCTTTTTGAA GTCCATTCTT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46802791	NES11001788	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33352196					SNP	T	T	T	T	T	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802791	NES11001788	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7335346 () rs orientation: forward

Symbol	Name	Function Class
DXImx26	DNA segment, Chr X, Immunex 26	within coordinates
DXImx27	DNA segment, Chr X, Immunex 27	313 bp distal
Gm32829	predicted gene, 32829	within coordinates