rs33352949 SNP Detail

Summary

• ID
  rs33352949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7458645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTCACCT ATGCCACCCT
  TATCCGATGG GTAAGCAGGG CAATAGAGGC CCAGCAGCTG GTGGGCGGCA GGGGGGGAGT
  TGTGGTGGGG AGTGCTTGCC TCCTACATTG CACCAAGAGC AGAATTCACC CATTAACAAA
  CCTCAGCTCT GAGGAGCCCC AAGATGTGAT CCTTCTTGAT AGCTTCACCT CAGATCTAGC
  Y
  CTCAACCCAA AACTACTGCA AGCCAGGTCA GTGCAAAGCA AACTGTAACA CTACAAACTA
  CCCTTTCCTT TGTCCACCCT ATCTCTAACA TCACCCTTGA CCTCATGCCT CACCCTATTC
  TTTCTCCTTC CCCTTGACCC ACAATTACAA AGCTATCATA GCTCAGAGGG CCGAGAGTAG
  GCTGCTCCCT CAGCCACAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46803727	NES10996623	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33352949					SNP	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46803727	NES10996623	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7458645 () rs orientation: forward

Symbol	Name	Function Class
Ccdc22	coiled-coil domain containing 22	1403 bp downstream
Foxp3	forkhead box P3	within coordinates
Gm36995	predicted gene, 36995	within coordinates
Tssr160389	transcription start site region 160389	672 bp upstream
Tssr160390	transcription start site region 160390	739 bp upstream
Tssr160391	transcription start site region 160391	819 bp upstream
Tssr160392	transcription start site region 160392	839 bp upstream
Tssr160393	transcription start site region 160393	1047 bp upstream
Tssr160394	transcription start site region 160394	1097 bp upstream