rs33353027 SNP Detail

Summary

• ID
  rs33353027
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25105874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCT CGGAGTCAGG CGTCAGGGAC
  S
  GCATCGCTGT GGCGAGATCC GCGAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J
ss39525855	mCV25251531	ABI	CRAMUS_MOUSE	f	SNP	G	C		G	C
ss60551977	NES16573543	PERLEGEN	MM_PANEL2	f	SNP			G			C		G
ss145368964	ENSMUSSNP5568886	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C			C
ss325334752	CHEV_17_25023845	CHEVERUD	SCREENING_POP	f	SNP							C		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J
rs33353027					SNP	G	C	G	G	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60551977	NES16573543	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25105874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8747	CpG island 8747	within coordinates
Nubp2	nucleotide binding protein 2	551 bp upstream
Rr339336	regulatory region 339336	within coordinates
Rr405096	regulatory region 405096	332 bp downstream
Spsb3	splA/ryanodine receptor domain and SOCS box containing 3	within coordinates
Tssr143106	transcription start site region 143106	929 bp downstream
Tssr143107	transcription start site region 143107	909 bp downstream
Tssr143108	transcription start site region 143108	883 bp downstream
Tssr143109	transcription start site region 143109	865 bp downstream
Tssr143110	transcription start site region 143110	135 bp downstream
Tssr143111	transcription start site region 143111	2 bp downstream
Tssr146788	transcription start site region 146788	1030 bp upstream
Tssr146789	transcription start site region 146789	1007 bp upstream
Tssr146790	transcription start site region 146790	991 bp upstream
Tssr146791	transcription start site region 146791	955 bp upstream
Tssr146792	transcription start site region 146792	547 bp upstream
Tssr146793	transcription start site region 146793	506 bp upstream