rs33353430 SNP Detail

Summary

• ID
  rs33353430
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164723121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTTG TGCAAAATGA AAACATGATT
  M
  CCATTGGCAT ATGTCTATAT TCCAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45268414	mCV23132584	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	C
ss148232736	ENSMUSSNP6174736	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		C
ss320607040	CHEV_2_164706701	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33353430					SNP	A	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164723121 () rs orientation: forward

Symbol	Name	Function Class
4930445K14Rik	RIKEN cDNA 4930445K14 gene	within coordinates
Cpgi12676	CpG island 12676	888 bp distal
Gm75548	predicted gene, 75548	1402 bp upstream
Pcif1	phosphorylated CTD interacting factor 1	Intron
Rr397480	regulatory region 397480	1690 bp downstream
Rr397481	regulatory region 397481	1097 bp downstream
Rr569751	regulatory region 569751	1834 bp distal
Rr569752	regulatory region 569752	1413 bp distal
Rr569753	regulatory region 569753	1798 bp distal
Rr569754	regulatory region 569754	912 bp distal
Rr569755	regulatory region 569755	1261 bp proximal
Tssr21683	transcription start site region 21683	1803 bp downstream
Tssr21684	transcription start site region 21684	1162 bp downstream
Tssr21685	transcription start site region 21685	1140 bp downstream
Tssr27592	transcription start site region 27592	1397 bp upstream