rs33353875 SNP Detail

Summary

• ID
  rs33353875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7335989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAAATGC CACCATACAA
  GCCCTTCAAA CAACACATCC AAGTTAAATA AAAGTAAGGA ATGCATCGGA GGTCTCCAGG
  GAGCTCTGGA GAATACAAGG CAAGCAGGAC CTCAGCAGGC AAATCTGTGG AGGTCAGGCT
  TGACAGAGGG CATCCTTATC CCACCCCATA CCAAGGCACC AAGTCCAAGA GCTTAGACTG
  Y
  ACTTCCCACC ACAGCCCTGC TTGAGCAACA CATTACTAGC CCATATCCTT GTGACCTTCA
  GGTGGAGGGA TGGAATGCCA AATGTGTGGA ATCTGGATAC AGATGGACAA ACTGACCTGG
  GTTTGCATTT TAACTATGTC ATTTATGAGC TGTAATGTGC TATGGGACTT ACTGAACAGC
  TCTATGCATG TGTCTCTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46802812	NES11001807	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33353875					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802812	NES11001807	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7335989 () rs orientation: forward

Symbol	Name	Function Class
DXImx26	DNA segment, Chr X, Immunex 26	555 bp distal
DXImx27	DNA segment, Chr X, Immunex 27	956 bp distal
Gm32829	predicted gene, 32829	within coordinates