rs33353972 SNP Detail

Summary

• ID
  rs33353972
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7460665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCTGCTC CTCCTATTCC
  CGTAACAGCA GCCTGTTCCT TCCCATCACT GGGCTTCTGG GTATGTCCTT CCCTCCACTC
  CACCTAAAGC AGCAACTTCT GCCATGGGCT CTGGGAGGCA TTAGGAGCCG CAAGCTAAAA
  GCCAGGGCTC AGAGTAGGCT ACTGGCTAGC TTCAGGTCCC AGGCACAGTG GGCACGAAGG
  S
  AAAGCCTCTA GCTGTTAGTT GTCTGGTTTC AAAGACTCTC AGCGCAAAAC AAGGAACTAT
  CCCCTGGCCT GTCTCCATTC CCCTTACCAG TCCCAGGTCT CACCTGCTCC TCAAGATCTC
  GAACTTCCCT CATGATAGTG CCTGTGTCCT CAATGGTCTG GATGAGCTGA CTGCAATTCT
  GGAGACAGCA AGAATACAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46803742	NES10996628	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33353972					SNP	C	C	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46803742	NES10996628	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7460665 () rs orientation: forward

Symbol	Name	Function Class
Ccdc22	coiled-coil domain containing 22	within coordinates
Foxp3	forkhead box P3	within coordinates
Gm36995	predicted gene, 36995	within coordinates
Tssr160389	transcription start site region 160389	1347 bp downstream
Tssr160390	transcription start site region 160390	1254 bp downstream
Tssr160391	transcription start site region 160391	1190 bp downstream
Tssr160392	transcription start site region 160392	1174 bp downstream
Tssr160393	transcription start site region 160393	966 bp downstream
Tssr160394	transcription start site region 160394	915 bp downstream
Tssr162800	transcription start site region 162800	626 bp downstream
Tssr162801	transcription start site region 162801	784 bp downstream
Tssr162802	transcription start site region 162802	1016 bp downstream