rs33354212 SNP Detail

Summary

• ID
  rs33354212
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:132570761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGTTCTTT TAACCGCGCC GGGGATCTTC CCCGTTCACC
  TACCCGCGCG CCACAGGCTC GGGCCGCGGC CACACACACA CACACACACC CCAAGAAGAA
  R
  AAAAAAATTG ACACCGAGCC CCCCTTCCTC CTGCACGGGC TTTTCCCTCC CGCCGCGAGG
  AAGGGCGCGG GGGAGAAAGC GGCTGGGAGA AATAAAAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
ss45769094	mCV23253987	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss144496918	ENSMUSSNP4893626	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321694537	CHEV_5_133017792	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
rs33354212					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:132570761 () rs orientation: forward

Symbol	Name	Function Class
Auts2	autism susceptibility candidate 2	within coordinates
Cpgi16710	CpG island 16710	within coordinates
Cpgi16711	CpG island 16711	737 bp proximal
D5Mit324	DNA segment, Chr 5, Massachusetts Institute of Technology 324	850 bp distal
Rr621808	regulatory region 621808	662 bp distal
Rr621809	regulatory region 621809	within coordinates
Rr621810	regulatory region 621810	725 bp proximal
Rr621811	regulatory region 621811	1412 bp proximal
Tssr53594	transcription start site region 53594	81 bp downstream
Tssr53595	transcription start site region 53595	269 bp downstream
Tssr53596	transcription start site region 53596	453 bp downstream
Tssr53597	transcription start site region 53597	1214 bp downstream
Tssr53598	transcription start site region 53598	1241 bp downstream
Tssr53599	transcription start site region 53599	1441 bp downstream