rs33354768 SNP Detail

Summary

• ID
  rs33354768
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7437059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCACAGATA AGAAAAGGGA TCCCCTGAGG TCCACCACCA
  TTTCCCCAGA GGGCTGGATC ACGGGGGGTA GCTATTCTTC AACAGCACTT CAAATCAGCA
  R
  CAGCACACAG GCCTTAAAAC AATAATAAGT TGAAATGTAT TTGCTAGGAA AGTCACCGAC
  CTACAAAGAA AACCTTATCG CTGATCTAGC AGCGCACACC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46803595	NES10997666	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33354768					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46803595	NES10997666	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7437059 () rs orientation: forward

Symbol	Name	Function Class
Gm36995	predicted gene, 36995	within coordinates
Ppp1r3f	protein phosphatase 1, regulatory subunit 3F	within coordinates
Rr122	regulatory region 122	within coordinates
Rr689613	regulatory region 689613	within coordinates
Tssr160371	transcription start site region 160371	364 bp upstream
Tssr160372	transcription start site region 160372	374 bp upstream
Tssr160373	transcription start site region 160373	1719 bp upstream
Tssr160374	transcription start site region 160374	1792 bp upstream
Tssr160375	transcription start site region 160375	1819 bp upstream
Tssr160376	transcription start site region 160376	1846 bp upstream
Tssr160377	transcription start site region 160377	1853 bp upstream
Tssr160378	transcription start site region 160378	1879 bp upstream
Tssr160379	transcription start site region 160379	1917 bp upstream
Tssr160380	transcription start site region 160380	1976 bp upstream
Tssr162794	transcription start site region 162794	18 bp downstream
Tssr162795	transcription start site region 162795	1501 bp downstream