rs33354918 SNP Detail

Summary

• ID
  rs33354918
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7461500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAACCAGG GTAACTATCA
  GTGCACATCT TGGGCAAGGT AGCTGATCAG TGATAACACT CACGTGCCTA TACTTACATC
  CAGTCAGGGC CCATGTCGCT GTGTTGGGGT GACTATTATG TGTTGGAGTG TGCCTGAACA
  GCTCTGCCTA GTAGTGAGCA TAAAGTCCCT GTGTGATCAC CCCTATGCTT GTCTGCCTAC
  R
  TGAGCCATCA ATCAGAGCCA CAGTGACATC ATACCTTAGT GATCTCTTCC TTCTGCTTCC
  GGATGTTGCC CACAATCTCC AGGATGCGCT GAGTATAGGC CAGCCGGGAC ACATCTTTTG
  GCAGAGTCTC CAGCTCTGAC ACCTAGGTGG GAACATGGCA GGCGTGAGCC CAAGCCCTAT
  ACCACAACCA CCCTTACAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46803748	NES10996630	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33354918					SNP	A	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46803748	NES10996630	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7461500 () rs orientation: forward

Symbol	Name	Function Class
Ccdc22	coiled-coil domain containing 22	within coordinates
Foxp3	forkhead box P3	18 bp downstream
Gm36995	predicted gene, 36995	within coordinates
Tssr160393	transcription start site region 160393	1801 bp downstream
Tssr160394	transcription start site region 160394	1750 bp downstream
Tssr162800	transcription start site region 162800	197 bp upstream
Tssr162801	transcription start site region 162801	42 bp upstream
Tssr162802	transcription start site region 162802	181 bp downstream