rs33354921 SNP Detail

Summary

• ID
  rs33354921
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7462345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTTGGCG AGGTTGGCAG
  CCCCATCAGG CAGCAATTCC ACCGTCCTGC TCTTCAGGCG CAGGGCCTGC TCCTGCTCGG
  CCACACTGAG TTCACTTTGT CGGCACTCGG TTTCCACCTG GTACACTCAC AGCCAAGCTC
  CCAGTCATAC ACACAGCCCA CGATCCCAGT GAGCCCATTA TGGCCCTGGC CCAGCTCAAG
  R
  CCTCAGAGAA CTCCAAGGCC CCTACCTACT ACAGGCTTTG GCATCTTCAG CTCTGTACTG
  ACAGCCAGAG GCTCTGAGAA GCCCTGTAAG GCCCTGCCCC TACACATCCT CCTTGATCCC
  CTGATGCCCA TAGCTCCTAT GTTCCCCTAC AAAGCCTGAC TGATGCCAGA CCTATAGGCC
  TATATAGTCT ATATAGACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46803751	NES10996631	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33354921					SNP	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46803751	NES10996631	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7462345 () rs orientation: forward

Symbol	Name	Function Class
Ccdc22	coiled-coil domain containing 22	within coordinates
Foxp3	forkhead box P3	863 bp downstream
Gm36995	predicted gene, 36995	within coordinates
Tssr162800	transcription start site region 162800	1042 bp upstream
Tssr162801	transcription start site region 162801	887 bp upstream
Tssr162802	transcription start site region 162802	656 bp upstream