rs33355267 SNP Detail

Summary

• ID
  rs33355267
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110649914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCTTGGT CACCTGTGCC
  TTTAAAGGTG GTTCCCAGTC CCTGTGTATG CATGAGGACA GAGAAGCATT AAGGAAAAGG
  GAACAAGATG AGGGAATAAT TCAGTAACAG GCAATGGGTT GGGAGCCTGG GGGAGTTTCT
  TGTCTCACTG ACCCTTTGGT ACCTCCGAAA TACACAAATG GAAAGCCACA CAGAGAAATC
  R
  TGCACACGTG GAGCCCAGTG CAAGACTCAA GGAAGGAAGC CATGTGTGGT GGCCATCCCA
  GGCAGGACTC AGAAGGTAGA GGCAGGAAGA GTCAAGGCCA TCCTTGGCTA CTTGGTAAGT
  TCAAGGCCAG CCTGGGCTAC ATGAGACCCC ATCTCCACAA CAAACACCTA AGGAAGTAAG
  AGTGGATTAT TAAGGGACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss47288118	NES11406059	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs33355267					SNP	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47288118	NES11406059	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110649914 () rs orientation: forward

Symbol	Name	Function Class
1700001K19Rik	RIKEN cDNA 1700001K19 gene	861 bp upstream
Gm53768	predicted gene, 53768	within coordinates
Rr472964	regulatory region 472964	1926 bp distal
Tssr117784	transcription start site region 117784	916 bp upstream
Tssr117785	transcription start site region 117785	857 bp upstream