rs33355836 SNP Detail

Summary

• ID
  rs33355836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7463410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAAGGAA ACCTCCCTGA
  CAACCCCGAC CCTATAACCT CATGATTCTA TACCCACCCT GACCATCCTG ACTCTACAAC
  TACCATGACA CTATAACCAC CTGACCATCT GGACCCTATA TCCACCCTGA CCCTACAACC
  TCTTCATGAT TCTATACCCA CCCTGACCAC CCTGACCTTA CAACCGCCAT GACCCTATAA
  Y
  CACCTGACCA CCCGGACCCT ATGTCCACCC TGACCCTATA ACTACTCTGA CTCCATAACG
  ACCTTGCCCA AAATGTCCAC AAGAAAGATG AGTGTCTAAG GAGAAAAGAT GTTTCCAAAG
  GGAAAAAATT TCCAAAGGAA AGCCCAAGGA AAGATGGACT TTGTACTAGG AGCACTTCAC
  ACTCTTACAC AAGTCCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46803757	NES10996633	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33355836					SNP	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46803757	NES10996633	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7463410 () rs orientation: forward

Symbol	Name	Function Class
Ccdc22	coiled-coil domain containing 22	within coordinates
Foxp3	forkhead box P3	1928 bp downstream
Gm36995	predicted gene, 36995	within coordinates
Tssr162801	transcription start site region 162801	1952 bp upstream
Tssr162802	transcription start site region 162802	1721 bp upstream