rs33358103 SNP Detail

Summary

• ID
  rs33358103
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88747004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT CTGAGGCAGG GTTTCTCTGT
  R
  TAGCCCTGGC TGTCCTGGAA CTCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39526630	mCV25115693	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss146190946	ENSMUSSNP4071379	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33358103					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88747004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9640	CpG island 9640	616 bp proximal
Foxn2	forkhead box N2	1135 bp upstream
Rr340320	regulatory region 340320	196 bp proximal
Rr343689	regulatory region 343689	1204 bp distal
Rr405533	regulatory region 405533	787 bp upstream
Tssr146228	transcription start site region 146228	1138 bp upstream
Tssr146229	transcription start site region 146229	1166 bp upstream
Tssr146230	transcription start site region 146230	1495 bp upstream
Tssr146231	transcription start site region 146231	1948 bp upstream