rs33358261 SNP Detail

Summary

• ID
  rs33358261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122268871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCT TGATCTCCTG ATCCTCCTGC
  Y
  TCCACCTCCA AAGTGCTGGG ATTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45768768	mCV24601169	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss321668874	CHEV_5_122580817	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33358261					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122268871 () rs orientation: forward

Symbol	Name	Function Class
Ccdc63	coiled-coil domain containing 63	within coordinates
Cpgi16543	CpG island 16543	936 bp distal
Cpgi16544	CpG island 16544	975 bp proximal
Rr399322	regulatory region 399322	261 bp upstream
Rr619773	regulatory region 619773	1140 bp distal
Rr619774	regulatory region 619774	1615 bp distal
Rr619775	regulatory region 619775	40 bp distal
Rr619776	regulatory region 619776	62 bp proximal
Rr619777	regulatory region 619777	618 bp proximal
Rr619778	regulatory region 619778	1076 bp proximal
Rr619779	regulatory region 619779	1185 bp proximal
Tssr48636	transcription start site region 48636	1135 bp upstream
Tssr53079	transcription start site region 53079	387 bp upstream
Tssr53080	transcription start site region 53080	1150 bp downstream
Tssr53081	transcription start site region 53081	1168 bp downstream
Tssr53082	transcription start site region 53082	1180 bp downstream