rs33358748 SNP Detail

Summary

• ID
  rs33358748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:117258808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAC CCCGGAGGGA CTTGCGACGA
  Y
  GGAGTGAGTG AGCGAGGAGA TCCGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45769150	mCV23379613	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss149148364	ENSMUSSNP1198835	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss321658468	CHEV_5_117570752	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33358748					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117258808 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16405	CpG island 16405	within coordinates
Gm57263	predicted gene, 57263	700 bp upstream
Rr378521	regulatory region 378521	236 bp upstream
Rr399292	regulatory region 399292	601 bp downstream
Rr618571	regulatory region 618571	1451 bp distal
Rr618572	regulatory region 618572	711 bp distal
Rr618573	regulatory region 618573	604 bp distal
Rr618574	regulatory region 618574	within coordinates
Taok3	TAO kinase 3	Intron
Tssr48350	transcription start site region 48350	563 bp downstream
Tssr48351	transcription start site region 48351	547 bp downstream
Tssr52880	transcription start site region 52880	846 bp upstream