rs33359232 SNP Detail

Summary

• ID
  rs33359232
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7503054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGGCCT CAAACTCACA
  GAGATCCACC TGCTTCTGCC TCCTGAGTGC TGGAATCAAA GGCGTGTGCC ACCATCACCT
  GGCAATTATC TTTTTTTAAC CAGCACAATC ATACACATAA TATTTTAAAA CATTTTACAT
  GTCCAAAATC AAACAGGAGT AAATATTAGA AATGAGATTC AAACAACCGA GAGCTAAAAC
  R
  CAAACAATTG GGAAGTATCT ATTATATACT TGTGTTTTGT AAATAAATAT GGGAGCCAGG
  CATGGTGGCA CATGCCTTTA ATCCTAGCAT TTTGGAGGCA AAGGCAGGCA GATCTCTATA
  AGTTCGTGGC CAGCCTGATC TATACAGAGT GAATTCCAGG ACAGCCAGGG CTACAGAGAG
  AAACCCTGTC TCAGAAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46804171	NES10994187	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33359232					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46804171	NES10994187	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7503054 () rs orientation: forward

Symbol	Name	Function Class
Cacna1f	calcium channel, voltage-dependent, alpha 1F subunit	1619 bp downstream
Cpgi22570	CpG island 22570	1713 bp proximal
Rr689617	regulatory region 689617	1334 bp proximal
Rr689618	regulatory region 689618	1667 bp proximal
Syp	synaptophysin	1765 bp upstream
Tssr160397	transcription start site region 160397	1859 bp upstream