rs33359497 SNP Detail

Summary

• ID
  rs33359497
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24655198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGGTTAAGA GCAGTGGCTG TTCTTTCAGA GGACTTAGGC
  TCACTTCTCA TTATACCACA CGGCAACTCA AGAGTCTCTA TAACTCCGGT CCCAGAGGAT
  M
  CTGACCTTCA CAGGCAGCAG GTACTTGTCT GTACATAATA CATATATGTA CACACACAGG
  GGATACACCA TACACATATA GAGCTATGTG TAGAGCATT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45769075	mCV23236497	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C
ss148093825	ENSMUSSNP6285019	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		C
ss321495783	CHEV_5_23956018	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33359497					SNP	A	A	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24655198 () rs orientation: forward

Symbol	Name	Function Class
2310074N15Rik	RIKEN cDNA 2310074N15 gene	1711 bp downstream
Agap3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	1977 bp upstream
Cpgi15603	CpG island 15603	1237 bp proximal
Gm10472	predicted gene 10472	within coordinates
Rr608323	regulatory region 608323	1795 bp distal
Rr608324	regulatory region 608324	1487 bp proximal
Tssr45426	transcription start site region 45426	1737 bp upstream
Tssr45427	transcription start site region 45427	1773 bp upstream
Tssr50327	transcription start site region 50327	1502 bp downstream