rs33359636 SNP Detail

Summary

• ID
  rs33359636
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33857464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG TGAAGTGATT AAATGGGTCA
  Y
  GCACCTGCTA CACCAGTCCC CATCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss39526733	mCV24098554	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		T
ss62686865	NES17316527	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		T	T	T	C		T	T	T	T
ss145493344	ENSMUSSNP6964331	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss325366941	CHEV_17_33775435	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs33359636					SNP	C	C	T	T	T	C	T	C	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62686865	NES17316527	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33857464 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	within coordinates
Rr392542	regulatory region 392542	1003 bp upstream
Tssr143785	transcription start site region 143785	678 bp downstream
Tssr143786	transcription start site region 143786	660 bp downstream
Tssr143787	transcription start site region 143787	380 bp downstream
Tssr143788	transcription start site region 143788	367 bp downstream
Tssr143789	transcription start site region 143789	349 bp downstream
Tssr147440	transcription start site region 147440	1421 bp downstream