rs33360085 SNP Detail

Summary

• ID
  rs33360085
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7504162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATGTTTC CAAATTCAAG
  CAACAGAAGG GTATAAAATG GTGATTTTAA TCTCAACTAT ATTTTTTCCC TTGCATTTTG
  TAACATGGCA ATCATCACTG AGGGTGCTGG GCCTAGTTTT AGTATCATGA AAGAAGGTAA
  GTAGTCTGTT AAGAGACAGC AGAACCCACA CAGTGAGATG AGAGAACCTA TCTGGCAGGT
  W
  GTCCTCTCCT CACACTTATA CAGGATTGCC CCTCCCCTTC CCTCCGTCCC TCTCTCTATG
  CTAAATAAAT GTATTGTTAA AAGAAAGGGA GCTATCACAC AATAAATACA TGGATTTTTA
  AAAGAGGGCC AAGGAATAAA CAGAAGGTAA ACTATATAGT CGGCTATAAT TTGACCAAGA
  AGAAGAGAAA AAAAATGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46804174	NES10994049	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs33360085					SNP	A	A	A	A	A	A	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46804174	NES10994049	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7504162 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22570	CpG island 22570	605 bp proximal
Rr689617	regulatory region 689617	226 bp proximal
Rr689618	regulatory region 689618	559 bp proximal
Syp	synaptophysin	657 bp upstream
Tssr160397	transcription start site region 160397	751 bp upstream