rs33360088 SNP Detail

Summary

• ID
  rs33360088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:7505012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGCAGGGT GCAAGGGGCG
  TGGCTGCCGC CGACTGGGCT GTTCCGACGA TCGCGCACCG CCCCCGCCGC TCCCCGCGCC
  CGCCCTTGCT ACCAGGCACC TTCCGCCCCC CGCATTGCTG ATGCTGCTGC TGGCAGACAT
  GGACGTGGTG AATCAGGTAC GCGCTCCAGC ACCGTGGACA GAGCCCGGCG CTTGCAGAAA
  Y
  CTGGGTGGCT TTGGCCCTCG AACCCTGAGA GGTGGTGGCG AGGGGAGCAG AGATACGGTC
  GCTGGAGCTG GGGCTGGGGC TGGGGCTGGG GCTAGGGGTC TGCAGCAGGC AAGGGGAAAG
  GGGGAGGTGG AGAAAAGGAG TGCGCTCTTT GCCGCAGCGA AGGCTGTCCT CACTGCCGCA
  GAGGGGGCCT CCAGATGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46804177	NES10994024	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33360088					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46804177	NES10994024	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7505012 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi22570	CpG island 22570			within coordinates
Rr689617	regulatory region 689617			292 bp distal
Rr689618	regulatory region 689618			within coordinates
Syp	synaptophysin			Coding-Synonymous
				Intron
Tssr160397	transcription start site region 160397			76 bp downstream