rs33360881 SNP Detail

Summary

• ID
  rs33360881
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:68890323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGACAGAT GATTGTTAAT
  TCCCATTATT TTTGTTGCTA GAGGTGGTGT TATGTGTGTG TGATTCTCCT CTTTTGGATT
  TGTTGTGAAA TGTTTAATTT CTAGTGTTTT CTTGGGTGTA GTTACCCTCC TGGTGTTGGA
  GATTTCCTCC TAGTATCCTC TGTAGGGATG GATTAGTAGA AAGATCATTG TTTAAATTTG
  R
  TTTTGTCATG GAATAGCTTG GTTTCTCCAT CCATGGTGAT TGAGAGTTTT GCTGGGTATA
  GTATACTAGA CGAGCATTTG TAGTCTCTTA GGTTCTGAAT GACATCTGTC CAGAATCTTC
  TGACTGGCCT CCTTGGAGGC AGGTAGAGCT CTGTGACCTG GGTTAGAACC AGTCTCCTGG
  TAGGTAGGCA GTGCTATCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45268676	mCV25079730	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G	G
ss146726745	ENSMUSSNP279101	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33360881					SNP	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68890323 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cers6	ceramide synthase 6			Intron
				Noncoding-Transcript-Variant
Rr558369	regulatory region 558369			1412 bp proximal
Rr558370	regulatory region 558370			1531 bp proximal
Rr558371	regulatory region 558371			1858 bp proximal