rs33360954 SNP Detail

Summary

• ID
  rs33360954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7506238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCACTTC CATCCCTATT
  TCCCACACCC CTTCCCCTCC CCACTGTTTT TCTCCTCAGC TGGTGGCTGG GGGTCAGTTC
  CGGGTGGTCA AGGAGCCCCT TGGCTTCGTG AAGGTGCTGC AGTGGGTGAG TGTGGTCCGG
  GCTATAGGTG GGGGAAGTAC AGGGGGAGAT GGTGGTGGTG ATGGGCTCCA GCAAAACAGA
  R
  GGGTGAGGCA GGAGGCGTCC TACTGAACTG GTGGGTGGAA CGACAGGGGT GGAAGGAGAT
  GAGGGAATTG GGCTCCAGAG TAAGGTCCCA GGGATTTAAG GACAGGGAAC AGAAGGCTAT
  GACGTCACAT AAGGCCGTGG GTACCCCTGT TGTGAAGTGA CAGAGTGTGA CGTTCTACCT
  CCTCTCTTGA ACTAAAGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46804183	NES10994029	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33360954					SNP	G	G	G	G	G	G	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46804183	NES10994029	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7506238 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22570	CpG island 22570	1049 bp distal
Rr689617	regulatory region 689617	1518 bp distal
Rr689618	regulatory region 689618	within coordinates
Syp	synaptophysin	within coordinates
Tssr160397	transcription start site region 160397	1302 bp downstream
Tssr160398	transcription start site region 160398	1094 bp upstream