rs33361034 SNP Detail

Summary

• ID
  rs33361034
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64977763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAT GAGGAAGGTG CCGCATCGCG
  Y
  GCTGCTGCCC TCTGTCCCAT CTGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45769735	mCV24258349	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		C
ss51142146	NES13844336	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	C		C	C	T	T	C	T	T	C
ss148576859	ENSMUSSNP2084479	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33361034					SNP	T	T	T	T	T	T	C	T	C	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51142146	NES13844336	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64977763 () rs orientation: forward

Symbol	Name	Function Class
Gm31684	predicted gene, 31684	670 bp downstream
Klf3	Kruppel-like transcription factor 3 (basic)	within coordinates
Rr612115	regulatory region 612115	544 bp distal
Tssr46420	transcription start site region 46420	535 bp upstream
Tssr46421	transcription start site region 46421	1495 bp upstream
Tssr46422	transcription start site region 46422	1658 bp upstream
Tssr46423	transcription start site region 46423	1697 bp upstream
Tssr46424	transcription start site region 46424	1800 bp upstream