rs33361427 SNP Detail

Summary

• ID
  rs33361427
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85416903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATATCAGTCC GGGACGCGGC ACTCAAAGGA AGAGAAAAGT TGGTAGGGAG GCGTCAGCAT
  TAGTCGAAGG CCAACATCTT GAAAGATGAA GGCACATACC GGATTTTTAT ATTAAGTGCC
  AGGACTATAC ATTCCTTTTA GGGTCCTCCT GTGTTCAAGG TGTGTGGCTC CCCTTTTCCC
  TTTACAATGT GGTCGTGGAC TTTGACTTCC GAGAGTTAAT TCCTGTAGTT GTATTCACAC
  AGACCTGTTA CTTTTCTGCA AGTCAAATTT CACGTCAGTT TACATACATT GAATTGAAGG
  R
  GGGGGGGGAC TTTGCAAAGG TCACCTTACG GTTTTCTGGG TTTAACTAAA GATAGAGCAG
  TTAGCATTTT TAGCCTTTGA GATGGGATTT CTCTACTAGA ATTTGGGGCA GTAAGGAAGG
  GACTTTATGG ATTAGGGAGG GACAACAACC TTTTCAACTG TCAAAGGGAG GACTGAGGAC
  CTGGGCCACA GCTAAGGAGC TGGCATACAA TGTGACCATC TCCCTACCAT CCCCTCCTCC
  AGGTGTGCTG TGATCACAGA GTTTGCTCGA ATTCATCTTG GGGCCAAGGG AATCCAGAGT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46266613	mCV24193302	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
ss145392114	ENSMUSSNP1571050	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33361427					SNP	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85416903 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20706	CpG island 20706	225 bp distal
Rr666576	regulatory region 666576	800 bp distal
Rr666577	regulatory region 666577	1031 bp distal
Rr666578	regulatory region 666578	461 bp distal
Trmt1	tRNA methyltransferase 1	within coordinates
Tssr78430	transcription start site region 78430	971 bp downstream
Tssr78431	transcription start site region 78431	956 bp downstream