rs33362434 SNP Detail

Summary

• ID
  rs33362434
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:7632069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAACTGA TCCTGCTCCC
  AGTCTTTCTC CTTACTCCAT GGCCAGGGAC CCTCGGAGCC CACCCAAACC CATTCTCCCC
  TCCTCCGTAG CCTATATTTT CCCCGTGCTG AAATTATAGG CATGGAGGAG GCCAGCAGGT
  GGACATGTCA GTGCGTCTCT GGCCATGCCT TACCCTTACT AGAATTCACG TACAGATCTC
  R
  CAAACCTGAC TACTTGGATA GGCGTGGCCT TCCTAAACGC CCGCCCTCCT GTGGGTAGGG
  CCATGCAGCC CCTGCTCAGC CCTCCTCGTA CCTGACAAAC CCACCCTCCC GGGCCTCTAG
  AGCGTCCAGA CTAGTGGGTG GAAGCCTAAA TGTGCTGAGT CATCGGCCTG GGCTCTGAGA
  GAGGGGAGGG GACCTGGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46805122	NES10988077	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33362434					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46805122	NES10988077	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7632069 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr394688	regulatory region 394688			within coordinates
Rr689656	regulatory region 689656			1733 bp distal
Rr689657	regulatory region 689657			1422 bp distal
Tfe3	transcription factor E3			Intron
				Noncoding-Transcript-Variant
Tssr160430	transcription start site region 160430			1865 bp downstream
Tssr160431	transcription start site region 160431			1567 bp downstream
Tssr160432	transcription start site region 160432			1543 bp downstream
Tssr160433	transcription start site region 160433			1509 bp downstream
Tssr160434	transcription start site region 160434			1479 bp downstream
Tssr160435	transcription start site region 160435			1415 bp downstream
Tssr160436	transcription start site region 160436			1694 bp upstream
Tssr162816	transcription start site region 162816			19 bp upstream