rs33362437 SNP Detail

Summary

• ID
  rs33362437
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:7632382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTAGAG CGTCCAGACT
  AGTGGGTGGA AGCCTAAATG TGCTGAGTCA TCGGCCTGGG CTCTGAGAGA GGGGAGGGGA
  CCTGGAAGAG GGGCAGGAAG AGAGGATTGT GAAACCTCCG AGATTTTCTA GACTGACTAG
  CTCCTGGCAG CAGAGCCCTG GGCAGGGAGG AAATGGAGTC TGGGGCTCCT CTGCAGCCTG
  R
  TGCCCACTTC CAGGAGCTCC AGATTAGGCT TGGCAACGTT CTGTTTCACA GTGCAGCTTC
  GGTTCCACCT GAGCTCAGGT TTTTAGTAAG AAAACCTCTT CTTCTCAGAG GCCAGCATCT
  AGTCACTCCG TGAACCTGCT CAGAGGTTTC ACCAATAAGG CCAAAGGCTA CAATCTTGTT
  TCCTCTCGAG GAGTTGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46805125	NES10988078	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33362437					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46805125	NES10988078	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7632382 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr394688	regulatory region 394688			within coordinates
Rr689657	regulatory region 689657			1735 bp distal
Tfe3	transcription factor E3			Intron
				Noncoding-Transcript-Variant
Tssr160431	transcription start site region 160431			1880 bp downstream
Tssr160432	transcription start site region 160432			1856 bp downstream
Tssr160433	transcription start site region 160433			1822 bp downstream
Tssr160434	transcription start site region 160434			1792 bp downstream
Tssr160435	transcription start site region 160435			1728 bp downstream
Tssr160436	transcription start site region 160436			1381 bp upstream
Tssr162816	transcription start site region 162816			332 bp upstream