rs33362440 SNP Detail

Summary

• ID
  rs33362440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:7632426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCATCGG CCTGGGCTCT
  GAGAGAGGGG AGGGGACCTG GAAGAGGGGC AGGAAGAGAG GATTGTGAAA CCTCCGAGAT
  TTTCTAGACT GACTAGCTCC TGGCAGCAGA GCCCTGGGCA GGGAGGAAAT GGAGTCTGGG
  GCTCCTCTGC AGCCTGATGC CCACTTCCAG GAGCTCCAGA TTAGGCTTGG CAACGTTCTG
  Y
  TTCACAGTGC AGCTTCGGTT CCACCTGAGC TCAGGTTTTT AGTAAGAAAA CCTCTTCTTC
  TCAGAGGCCA GCATCTAGTC ACTCCGTGAA CCTGCTCAGA GGTTTCACCA ATAAGGCCAA
  AGGCTACAAT CTTGTTTCCT CTCGAGGAGT TGGCCAGACT GTGACCTTTG AGTGATGGAA
  CTGTGTCTGG TCCCAGCGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46805128	NES10988079	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33362440					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46805128	NES10988079	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7632426 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr394688	regulatory region 394688			within coordinates
Rr689657	regulatory region 689657			1779 bp distal
Tfe3	transcription factor E3			Intron
				Noncoding-Transcript-Variant
Tssr160431	transcription start site region 160431			1924 bp downstream
Tssr160432	transcription start site region 160432			1900 bp downstream
Tssr160433	transcription start site region 160433			1866 bp downstream
Tssr160434	transcription start site region 160434			1836 bp downstream
Tssr160435	transcription start site region 160435			1772 bp downstream
Tssr160436	transcription start site region 160436			1337 bp upstream
Tssr162816	transcription start site region 162816			376 bp upstream